hmmer-2.3.2linux

................\00README

................\config.guess

................\config.sub

................\configure

................\COPYRIGHT

................\documentation

................\.............\man

................\.............\...\hmmalign.man

................\.............\...\hmmbuild.man

................\.............\...\hmmcalibrate.man

................\.............\...\hmmconvert.man

................\.............\...\hmmemit.man

................\.............\...\hmmer.man

................\.............\...\hmmfetch.man

................\.............\...\hmmindex.man

................\.............\...\hmmpfam.man

................\.............\...\hmmsearch.man

................\INSTALL

................\install-sh

................\LICENSE

................\Makefile.in

................\NOTES

................\squid

................\.....\00README

................\.....\a2m.c

................\.....\afetch_main.c

................\.....\aligneval.c

................\.....\alignio.c

................\.....\alistat_main.c

................\.....\clustal.c

................\.....\cluster.c

................\.....\compalign_main.c

................\.....\compstruct_main.c

................\.....\config.sub

................\.....\configure

................\.....\dayhoff.c

................\.....\eps.c

................\.....\file.c

................\.....\getopt.c

................\.....\gki.c

................\.....\gki.h

................\.....\gsi.c

................\.....\gsi.h

................\.....\gsi64.c

................\.....\gsi64.h

................\.....\hsregex.c

................\.....\install-sh

................\.....\iupac.c

................\.....\Makefile.in

................\.....\msa.c

................\.....\msa.h

................\.....\msf.c

................\.....\phylip.c

................\.....\revcomp.c

................\.....\revcomp_main.c

................\.....\rk.c

................\.....\rk.h

................\.....\selex.c

................\.....\seqencode.c

................\.....\seqsplit_main.c

................\.....\seqstat_main.c

................\.....\sfetch_main.c

................\.....\shuffle.c

................\.....\shuffle_main.c

................\.....\sindex_main.c

................\.....\sqerror.c

................\.....\sqfuncs.h

................\.....\sqio.c

................\.....\squid.h.in

................\.....\squidconf.h.in

................\.....\squidcore.c

................\.....\sreformat_main.c

................\.....\sre_ctype.c

................\.....\sre_math.c

................\.....\sre_random.c

................\.....\sre_random.h

................\.....\sre_string.c

................\.....\ssi.c

................\.....\ssi.h

................\.....\stack.c

................\.....\stockholm.c

................\.....\stockholm.h

................\.....\stopwatch.c

................\.....\stopwatch.h

................\.....\Testsuite

................\.....\.........\00README

................\.....\.........\bug-1-sfetch-paths

................\.....\.........\iospeed_main.c

................\.....\.........\Makefile.in

................\.....\.........\rndspeed_main.c

................\.....\.........\sqdconfig_main.c

................\.....\.........\testsuite.pm

................\.....\.........\x-base-afetch

................\.....\.........\x-base-alistat

................\.....\.........\x-base-seqstat

................\.....\.........\x-base-sfetch

................\.....\.........\x-base-shuffle

................\.....\.........\x-base-sindex

................\.....\.........\x-base-sreformat