.gitignore

LICENSE.md

abinitio

abinitio\C1

abinitio\C1\LUD

abinitio\C1\LUD\ATA_solver.m

abinitio\C1\LUD\Qtheta.c

abinitio\C1\LUD\Qtheta.mexglx

abinitio\C1\LUD\Qtheta_vsimple.c

abinitio\C1\LUD\SDPLR_prep.m

abinitio\C1\LUD\check_MSE.m

abinitio\C1\LUD\clstack2C.m

abinitio\C1\LUD\construct_S.m

abinitio\C1\LUD\cryoEMADM.m

abinitio\C1\LUD\cryoEMSDPL12N.m

abinitio\C1\LUD\cryoEMSDPL12N_vsimple.m

abinitio\C1\LUD\deterministic_rounding.m

abinitio\C1\LUD\est_orientations_LS.m

abinitio\C1\LUD\est_orientations_LUD.m

abinitio\C1\LUD\makemex.m

abinitio\C1\LUD\randomized_rounding.m

abinitio\C1\LUD\randstiefel.m

abinitio\C1\LUD\test_est_orientations.m

abinitio\C1\cryo_abinitio_C1_LUD.m

abinitio\C1\cryo_abinitio_C1_sync2n.m

abinitio\C1\cryo_abinitio_C1_sync3n.m

abinitio\C1\cryo_abinitio_C1_worker.m

abinitio\C1\sync2n

abinitio\C1\sync2n\cryo_analyze_sync_results.m

abinitio\C1\sync2n\cryo_syncconsistency.m

abinitio\C1\sync2n\cryo_syncmatrix.m

abinitio\C1\sync2n\cryo_syncmatrixIJ_vote.m

abinitio\C1\sync2n\cryo_syncmatrixIJ_vote_old.m

abinitio\C1\sync2n\cryo_syncmatrix_vote.m

abinitio\C1\sync2n\cryo_syncmatrix_vote_old.m

abinitio\C1\sync2n\cryo_syncrotations.m

abinitio\C1\sync2n\cryo_voteIJ.m

abinitio\C1\sync2n\cryo_voteIJ_old.m

abinitio\C1\sync2n\mycross.m

abinitio\C1\sync2n\rotratio.m

abinitio\C1\sync2n\rotratio_eulerangle.m

abinitio\C1\sync2n\rotratio_eulerangle_vec.m

abinitio\C1\sync2n\syncconsistency.m

abinitio\C1\sync2n\test_cryo_syncmatrix_1.m

abinitio\C1\sync2n\test_cryo_syncmatrix_2.m

abinitio\C1\sync2n\test_cryo_syncmatrix_3.m

abinitio\C1\sync2n\test_cryo_syncmatrix_new.m

abinitio\C1\sync3n

abinitio\C1\sync3n\ang2orth.m

abinitio\C1\sync3n\cryo_sync3n_Jsync_power_method.m

abinitio\C1\sync3n\cryo_sync3n_S_to_rot.m

abinitio\C1\sync3n\cryo_sync3n_estimate_Rij.m

abinitio\C1\sync3n\cryo_sync3n_estimate_all_Rijs.m

abinitio\C1\sync3n\cryo_sync3n_estimate_rotations.m

abinitio\C1\sync3n\cryo_sync3n_flip_handedness.m

abinitio\C1\sync3n\cryo_sync3n_syncmatrix.m

abinitio\C1\sync3n\cryo_sync3n_syncmatrix_weights.m

abinitio\C1\sync3n\makemex.m

abinitio\C1\sync3n\pairs_probabilities_mex.c

abinitio\C1\sync3n\signs_times_v_mex.c

abinitio\C1\sync3n\test_cryo_sync3n_1.m

abinitio\C1\sync3n\test_cryo_sync3n_2.m

abinitio\C1\sync3n\test_cryo_sync3n_2nvs3n.m

abinitio\C1\sync3n\test_cryo_sync3n_3.m

abinitio\C1\sync3n\test_cryo_sync3n_4.m

abinitio\C1\sync3n\test_cryo_sync3n_5.m

abinitio\C1\sync3n\triangles_scores.m

abinitio\C1\sync3n\triangles_scores_mex.c

abinitio\C1\sync3n\valid_k_for_ij.m

abinitio\C1\sync3n\vote_k_for_ij.m

abinitio\align

abinitio\align\bf3Dmatchaux.m

abinitio\align\cryo_align_densities.m

abinitio\align\eval3Dmatchaux.m

abinitio\align\genNearRotations.m

abinitio\align\genRotationsGrid.m

abinitio\align\refine3Dmatchaux.m

abinitio\align\test_cryo_align_densities_1.m

abinitio\align\test_cryo_align_densities_2.m

abinitio\align\test_cryo_align_densities_3.m

abinitio\align\test_cryo_align_densities_4.m

basis

basis\assoc_legendre.m

basis\basis_check_evaluate.m

basis\basis_check_expand.m

basis\besselj_newton.m

basis\besselj_zeros.m

basis\dirac_basis.m

basis\fourier_bessel_basis.m

basis\is_basis.m

basis\pad_basis.m

basis\precompute_basis.m

basis\real_sph_harmonic.m

basis\sph_bessel.m

common

common\FSCorr.m

common\GaussFilt.m

common\GetMD5

common\GetMD5\GetMD5.c

common\GetMD5\GetMD5.m