lastz_src

.........\.DS_Store

.........\bin

.........\images











.........\......\aglobin_closeup_seeds.png

.........\......\aglobin_hsps.png

.........\......\aglobin_unchained.png

.........\......\anchors_and_alignment.png

.........\......\before_chaining.png

.........\......\before_interpolation.png

.........\......\human_vs_chicken.png

.........\......\human_vs_chicken_full.png

.........\......\seeds_and_hsps.png

.........\......\seq_vs_same.png

.........\......\seq_vs_same_notrivial.png

.........\......\seq_vs_self.png

.........\......\seq_vs_self_no_mirror.png

.........\......\ydrop.png

.........\make-include.mak

.........\Makefile

.........\README.lastz.html

.........\src

.........\...\.DS_Store

.........\...\align_diffs.c

.........\...\align_diffs.h

.........\...\align_diffs.o

.........\...\align_diffs_D.o

.........\...\axt.c

.........\...\axt.h

.........\...\axt.o

.........\...\axt_D.o

.........\...\capsule.c

.........\...\capsule.h

.........\...\capsule.o

.........\...\capsule_D.o

.........\...\chain.c

.........\...\chain.h

.........\...\chain.o

.........\...\chain_D.o

.........\...\cigar.c

.........\...\cigar.h

.........\...\cigar.o

.........\...\cigar_D.o

.........\...\coverage_dist.c

.........\...\coverage_dist.h

.........\...\coverage_dist.o

.........\...\coverage_dist_D.o

.........\...\diag_hash.c

.........\...\diag_hash.h

.........\...\diag_hash.o

.........\...\diag_hash_D.o

.........\...\dna_utilities.c

.........\...\dna_utilities.h

.........\...\dna_utilities.o

.........\...\dna_utilities_D.o

.........\...\edit_script.c

.........\...\edit_script.h

.........\...\edit_script.o

.........\...\edit_script_D.o

.........\...\gapped_extend.c

.........\...\gapped_extend.h

.........\...\gapped_extend.o

.........\...\gapped_extend_D.o

.........\...\genpaf.c

.........\...\genpaf.h

.........\...\genpaf.o

.........\...\genpaf_D.o

.........\...\gfa.c

.........\...\gfa.h

.........\...\gfa.o

.........\...\gfa_D.o

.........\...\identity_dist.c

.........\...\identity_dist.h

.........\...\identity_dist.o

.........\...\identity_dist_D.o

.........\...\infer_scores.c

.........\...\infer_scores.h

.........\...\infer_scores.o

.........\...\infer_scores_D.o

.........\...\lastz

.........\...\lastz.c

.........\...\lastz.h

.........\...\lastz.o

.........\...\lastz_D

.........\...\lastz_D.o

.........\...\lav.c

.........\...\lav.h

.........\...\lav.o

.........\...\lav_D.o

.........\...\maf.c

.........\...\maf.h

.........\...\maf.o

.........\...\maf_D.o

.........\...\Makefile

.........\...\masking.c