ghmm-0.9-rc1

............\aclocal.m4

............\Makefile.am

............\ToDo

............\acinclude.m4

............\tests

............\.....\Makefile.am

............\.....\randvar_test.c

............\.....\data

............\.....\....\Makefile.am

............\.....\....\Makefile.in

............\.....\....\test.smo

............\.....\....\test10.sqd

............\.....\....\test100.sqd

............\.....\....\viterbi.sh

............\.....\root_finder_test.c

............\.....\Makefile.in

............\.....\label_higher_order_test.c

............\.....\shmm_viterbi_test.c

............\.....\test_gsl_ran_gaussian_tail.c

............\.....\sequences_old_format.c

............\.....\two_states_three_symbols.c

............\.....\chmm_test.c

............\.....\coin_toss_test.c

............\.....\libxml-test.c

............\.....\read_fa.c

............\.....\chmm.c

............\.....\sequences_test.c

............\depcomp

............\NEWS

............\Makefile.in

............\autogen.sh

............\ltmain.sh

............\tools

............\.....\Makefile.am

............\.....\scluster.c

............\.....\Makefile.in

............\.....\ghmm-config.in

............\.....\smo2xml.c

............\.....\cluster.c

............\.....\smix_hmm.c

............\.....\probdist.c

............\doc

............\...\ghmm.dtd.1.0

............\...\xml_switching-example.xml

............\...\xml_cont_example.xml

............\...\xml_data_structure.fig

............\...\xml_mix_cont_example.xml

............\...\xml_example.xml

............\README

............\GPL.txt

............\install-sh

............\COPYRIGHT.txt

............\missing

............\INSTALL

............\configure

............\configure.in

............\config.guess

............\ghmmwrapper

............\...........\wrapper_arrays.i

............\...........\wrapper_xmlfile.i

............\...........\Makefile.am

............\...........\wrapper_cmodel.i

............\...........\mixture.py

............\...........\gql.c

............\...........\testdata

............\...........\........\d_seq.sqd

............\...........\........\tiny.smo

............\...........\........\test2.xml

............\...........\........\tk.hmm

............\...........\........\multexon-4.xml

............\...........\........\multiple_hmmer.hmm

............\...........\........\test10.sqd

............\...........\........\model_label.xml

............\...........\........\tiny.txt.sqd

............\...........\........\discrete.xml

............\...........\........\es_discrete_testwrite.seq

............\...........\........\xml_cont_multiple.xml

............\...........\Makefile.in

............\...........\class_change.py

............\...........\sclass_change.h

............\...........\ghmm_gato

............\...........\.........\xmlutil.py

............\...........\.........\Graph.py

............\...........\.........\__init__.py

............\...........\.........\GatoGlobals.py

............\...........\.........\EditObjectAttributesDialog.py

............\...........\.........\DataStructures.py

............\...........\.........\GraphUtil.py

............\...........\.........\HMMEd.py

............\...........\wrapper_dpmodel.i

............\...........\sclass_change.c

............\...........\wrapper_dseq.i

............\...........\wrapper_dmodel.i

............\...........\pclasschange.c

............\...........\wrapper_cseq.i

............\...........\modhmmer.py

............\...........\pclasschange.h

............\...........\INSTALL

............\...........\sdclass_change.h